Master Thesis in the area of DNA computing.

Computational Chemistry, Molecular Dynamics; Medicinal Chemistry and Drug Discovery: Infectious diseases ( H pylori) and Cancer (Kinases); Anti-Inflammatory, anti-glaucoma and epilepsy; Chemical Biology of Cancer: Targetting DNA damaging mechanism involving Kinases, Chemical Biology of Nucleic Acids: DNA interacting dyes; Asymmetric Supramolecular catalysis / Asymmetric Organocatalysis; Synthesis of photoresponsive π-conjugated materials; Bio-inorganic chemistry, elctrochemistry, enzyme-inspired catalysts design, small molecule activation for renewable energy research; spectroscopy of gold nanoparticles, plasmon-enhanced spectroscopy; Bio-conjugates of porphyrins and Boron-dipyrromethene days for chemosensing and bio-imaging applications; Chemical crystallography, cryo crystallography of liquids, structural chemistry of drug like molecules, polymorphism of drugs.

Qiu, Advance the DNA computing [Ph.D

Intelligent Optimization Simulation System Based on DNA Computing V1.0, Granted No.

We discuss the potential of evolutionary DNA computing ..

[ DNA Computing and Molecular Programming (DNA21) proceedings,Lecture Notes in Computer Science (LNCS), Volume 9211, July 2015, pp 34-54 (21 pages) pdf, 432 KB ]Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands.

Optimal methods of encoding information for dna computing

[ DNA Computing and Molecular Programming (DNA21) proceedings,Lecture Notes in Computer Science (LNCS), Volume 9211, July 2015, pp 133-153 (21 pages) pdf, 790 KB ] [ Erratum: Figure 2a of the LNCS paper has a labeling error in the lower lefthand waste molecule.

] [ Accepted to the International Conference on DNA Computing and Molecular Programming 18, 2012.

Experimental DNA computing - Leiden Repository

[Published in DNA Computing 11, LNCS 3892: 305-324 (2006): .pdf, 595 KB.][Preprint, typos corrected 3/29/2006 (20 pages): .pdf, 237 KB.] Self-Replication and Evolution of DNA Crystals.

DNA Computing Presentation – Michael Ang

[Proceedings of the International Conference on Computer-Aided Design (ICCAD) 2005: .pdf, 646 KB.] Scaffolded DNA Origami: from Generalized Multicrossovers to Polygonal Networks.

to implementation of data flow logical operations based ..

Starting with apreviously-demonstrated DNA hybridization catalyst for doing exactlythat, we introduce schemes for an improved catalyst and for networksof catalysts that operate as computing circuits.

DNA-based computing is a suitable tool for these problems because of its massive parallelism during computation.

Human Knowledge: Foundations and Limits

DNA computing or well known as molecular computing is computing technique using DNA molecule to store information and using biochemistry operation as computational tool to manipulate string in DNA strand to produce the result. Lipton point out massive parallelism and storage capacity make this convenient to solve combinatorial problems. In this paper we proposed DNA based computer to solve vertex coloring problem where in this paper we proposed DNA encoding and computational procedure inspired by greedy algorithm to generate all possible solutions to coloring a graph.

Secondary structure formalisms for describing and analyzingDNA molecules allow these criteria to be rigorously treated computationally.

Science > Molecular & Cell Biology

NSF: Scaling up programmable and algorithmic DNA self-assembly. Winfree, Yin, Woods, Doty.
NASA: Simple self-replicating nanostructures. Woods.
NSF: Theory of molecular programming: computability and complexity. Doty, Woods.

Proceedings of the Fourth DIMACS Meeting on DNA BasedComputers, held at the University of Pennsylvania, June 16-19, 1998.

DNA Computing | Dna | Polymerase Chain Reaction

This thesis describes theory on the uniqueness of self-assembled structures with an expanded account of material in thepaper "The Program-Size Complexity of Self-Assembled Squares" (see below), experiments in algorithmic capillary force-based self-assembly as well as capillary force-based assembly of Penrose tilings, and DNA computation for breaking the Data Encryption Standard (DES).